PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105217.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 236aa    MW: 26798.3 Da    PI: 8.473
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105217.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-3591002102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed+ ++++isw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++         weF++++F+kg+k++l++
  XP_010105217.1   9 FLLKTYMLVEDPVTDDVISWNEEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKISTSR---------WEFSNDNFRKGEKDNLCQ 94 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_010105217.1  95 IRRRKA 100
                     ***985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-36293IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-33598IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-52598IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-32998IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18932IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-184759IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404872IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MRKSTPPPFL LKTYMLVEDP VTDDVISWNE EGTAFVVWQP AEFARDLLPT LFKHSNFSSF  60
VRQLNTYGFR KISTSRWEFS NDNFRKGEKD NLCQIRRRKA WANKQQPGAL IQAEAAGAAP  120
PPGPQESVVD EDQRSSSTSS SSEFITLVDE NKRLKKENGV LSSELTSMKS KCKELLDLVA  180
MHTRLDDQKE QNQVDGDQRP KLFGVRLEVE GEMEKKRKRA EVSQSASILL SQLACK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5x_E1e-219984104Putative transcription factor
5d5x_B1e-219984104Putative transcription factor
5d5w_B1e-219984104Putative transcription factor
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105217.11e-176Heat stress transcription factor B-3
SwissprotO222302e-70HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLW9S1J11e-176W9S1J1_9R
STRINGPOPTR_0016s05680.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-65heat shock transcription factor B3